Pumpkin Cream Cheese Muffins – Moist, Spiced & Creamy ✅

Before You Bake… Here’s What You Should Know:

Pumpkin Cream Cheese Muffins are a cozy fall favorite that combines the warm spices of pumpkin pie with a luscious cream cheese center. Inspired by the Starbucks classic, this homemade version is moist, fragrant, and easy to customize. Whether you’re baking for a festive breakfast, prepping snacks for the week, or gifting a treat to a friend — this recipe hits the sweet spot 🍁.

  • 🎃 Pumpkin Purée gives these muffins their rich, seasonal flavor (not to be confused with pumpkin pie filling!)
  • 🧁 Cream cheese centers add a surprise cheesecake-like bite
  • 🛠️ No mixer needed — simple ingredients, quick assembly
  • 🌰 Top with streusel or pumpkin seeds for texture and presentation
  • ❄️ Freezer-friendly: Bake now, enjoy all season
Table of contents

💭 The Morning I Fell in Love with Pumpkin Cream Cheese Muffins

It was one of those classic college mornings. I was running late, the air was crisp, and my to-do list was endless. I ducked into the Starbucks across from campus hoping for a caffeine miracle when I saw it — the Pumpkin Cream Cheese Muffin. One bite, and everything slowed down. The spiced pumpkin crumb was soft and warm, and the cream cheese center melted in my mouth like a hug I didn’t know I needed. 🍂

That single muffin became a ritual. Every fall, I’d grab one with a pumpkin cream cold brew and pretend I had life figured out. But let’s be honest — daily Starbucks isn’t exactly budget-friendly. So I started experimenting in my kitchen. Dozens of batches (and a few overfilled muffin tins) later, I finally nailed it.

And now, I’m sharing this perfected version with you — the same muffin that turned my chaotic fall mornings into something warm, comforting, and delicious. 💛

🎃 What Are Pumpkin Cream Cheese Muffins?

Pumpkin Cream Cheese Muffins are the ultimate autumn treat — moist, fluffy pumpkin muffins filled with a rich, slightly tangy cream cheese center, often topped with crunchy streusel or pumpkin seeds. Think of them as a cross between a classic pumpkin spice muffin and a mini cheesecake, all wrapped up in a cozy handheld snack.

These muffins are inspired by the popular Starbucks version, but making them at home means you can control the ingredients, customize the filling, and skip the long coffee shop lines ☕. The pumpkin flavor is deepened with warm spices like cinnamon, nutmeg, cloves, and of course, pumpkin pie spice — making every bite taste like fall.

While they look bakery-worthy, they’re surprisingly easy to make. You don’t need any fancy tools — just a mixing bowl, a muffin tin, and some good music in the background 🎶.

Whether you’re baking them for a holiday brunch, meal-prepping breakfast, or just craving something seasonal, these muffins deliver on flavor, texture, and nostalgia. They’re cozy, creamy, and oh-so-satisfying.


🧁 Why You’ll Love This Recipe

  • Moist and tender crumb that stays soft for days
  • 🧀 Cream cheese center offers a sweet surprise in every bite
  • 🍂 Packed with cozy fall spices
  • 🧁 Bakery-style appearance — domed tops and golden edges
  • 🧊 Freezer-friendly: make now, enjoy later
  • 🎨 Easily customizable: add chocolate chips, swap in pecans, or make mini versions
  • 🛠️ Simple pantry ingredients — no mixer required

Once you try these, they’ll be a staple in your fall baking rotation. Trust me, they disappear fast!

📝 Ingredients Breakdown

Let’s take a closer look at what makes these Pumpkin Cream Cheese Muffins so irresistibly good. Most of these ingredients are pantry staples, but the magic comes from how they work together to create that perfect soft, spiced muffin with a creamy center.

🎃 For the Muffin Batter:

  • Pumpkin Purée – The star of the show. Be sure to use pure pumpkin purée, not pumpkin pie filling, which contains added sugars and spices.
  • All-Purpose Flour – Provides structure and a soft, fluffy texture.
  • Granulated Sugar + Light Brown Sugar – A mix of the two gives depth and a touch of molasses flavor.
  • Eggs – Four large eggs help bind everything together and add richness.
  • Vegetable Oil – Keeps the muffins super moist (better than butter for this one).
  • Milk – Whole milk adds moisture and a slightly creamy texture.
  • Pumpkin Pie Spice – A warm blend of cinnamon, nutmeg, ginger, and cloves. You can make your own if needed.
  • Ground Cinnamon – Adds extra cozy notes.
  • Baking Soda & Baking Powder – For rise and fluff.
  • Salt – Balances the sweetness and enhances flavor.
  • Vanilla Extract – Adds a fragrant, dessert-like touch.

🧀 For the Cream Cheese Filling:

  • Cream Cheese – Use full-fat and make sure it’s softened to avoid lumps.
  • Granulated Sugar – Sweetens the filling without overpowering.
  • Vanilla Extract – Gives the cream cheese a subtle warmth.
  • All-Purpose Flour – Helps thicken the filling so it stays firm inside the muffin.

🌰 Optional Toppings:

  • Pumpkin Seeds (Pepitas) – For crunch and color.
  • Streusel Crumble – A mix of flour, sugar, cinnamon, and cold butter for a classic bakery-style topping.
  • Cinnamon Sugar – A simple dusting for a sweet, crunchy top.

👩‍🍳 Step-by-Step Instructions

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Pumpkin Cream Cheese Muffins

Pumpkin Cream Cheese Muffins

These Pumpkin Cream Cheese Muffins are ultra-moist, packed with fall spices, and filled with a luscious cream cheese center. A perfect Starbucks copycat you can make at home — easy to bake, freeze, and customize!

  • Total Time: 40 minutes
  • Yield: 16 muffins 1x

Ingredients

Scale

For the Muffin Batter:

  • 3 cups all-purpose flour
  • 1 cup granulated sugar
  • 1 cup light brown sugar
  • 4 large eggs
  • 1¼ cups vegetable oil
  • 1 cup whole milk
  • 2 cups pumpkin puree
  • 1 tbsp pumpkin pie spice
  • 1 tsp cinnamon
  • 1 tsp baking powder
  • 1 tsp baking soda
  • 1 tsp salt
  • 1 tsp vanilla extract

For the Cream Cheese Filling:

  • 8 oz cream cheese, softened
  • ¼ cup granulated sugar
  • ½ tsp vanilla extract
  • 1 tbsp all-purpose flour

Optional Topping:

  • Pumpkin seeds or streusel crumble

Instructions

  1. Preheat the oven to 350°F (175°C). Line muffin tins with paper liners.
  2. Make the filling: In a bowl, mix cream cheese, sugar, vanilla, and flour until smooth. Chill in the fridge.
  3. Mix the batter: In a large bowl, whisk together eggs, sugars, oil, milk, pumpkin puree, and vanilla. Add dry ingredients and mix until just combined.
  4. Assemble: Fill each muffin cup ⅔ full. Add a spoonful of cream cheese filling in the center. Optionally, top with seeds or streusel.
  5. Bake for 20–25 minutes, until tops are golden and a toothpick comes out clean (not through the center).
  6. Cool on a rack before serving. Enjoy warm, room temp, or chilled!

Notes

  • Use pure pumpkin puree, not pie filling.
  • Filling must be chilled before adding to batter.
  • Muffins can be frozen for up to 1 month.
  • Can be made with gluten-free flour or vegan substitutions.
  • Best eaten within 5 days when refrigerated.
  • Author: Astrid
  • Prep Time: 15 minutes
  • Cook Time: 25 minutes
  • Category: Dessert
  • Method: Baking
  • Cuisine: American
  • Diet: Vegetarian

Nutrition

  • Serving Size: 1 muffin
  • Calories: 295
  • Sugar: 18g
  • Sodium: 210mg
  • Fat: 16g
  • Saturated Fat: 4g
  • Unsaturated Fat: 11g
  • Trans Fat: 0g
  • Carbohydrates: 34g
  • Fiber: 2g
  • Protein: 4g
  • Cholesterol: 45mg

Keywords: pumpkin recipes, fall baking, cream cheese muffins, easy muffins, fall desserts, pumpkin muffins, Starbucks copycat, muffin recipe, seasonal baking, autumn recipes, breakfast muffins, Thanksgiving baking, cozy recipes, pumpkin spice, freezer-friendly muffins

These muffins are beginner-friendly, but it helps to follow the steps in order for the best results — especially when it comes to that perfect cream cheese center. Here’s how to make bakery-worthy Pumpkin Cream Cheese Muffins from scratch:


1️⃣ Prepare the Cream Cheese Filling

⏱ Time: 5 minutes

Start by making the filling so it has time to chill while you prep the rest.

In a medium bowl, combine:

  • 8 oz softened cream cheese
  • ¼ cup granulated sugar
  • ½ tsp vanilla extract
  • 1 tbsp all-purpose flour

Instructions:

  • Beat everything together until smooth using a hand mixer or stand mixer.
  • Avoid overmixing — too much air can make the filling collapse while baking.
  • Refrigerate or freeze for 15–20 minutes to firm it up.

2️⃣ Mix the Muffin Batter

⏱ Time: 10 minutes

You can do this in one large bowl — no mixer needed!

Wet ingredients (whisk together until smooth):

  • 4 large eggs
  • 1 cup granulated sugar
  • 1 cup light brown sugar
  • 1¼ cups vegetable oil
  • 1 cup whole milk
  • 2 cups pumpkin purée
  • 1 tsp vanilla extract

Add dry ingredients directly to the wet mix:

  • 3 cups all-purpose flour
  • 1 tbsp pumpkin pie spice
  • 1 tsp ground cinnamon
  • 1 tsp baking soda
  • 1 tsp baking powder
  • 1 tsp salt

Whisk or stir until just combined. Don’t overmix — this helps keep the muffins soft and tender.


3️⃣ Assemble the Muffins

⏱ Time: 10 minutes

  • Line a muffin tin with paper liners (makes ~16 muffins).
  • Fill each cup about 2/3 full with batter.
  • Using a piping bag or spoon, insert a generous dollop of the cream cheese filling into the center of each muffin.
  • Optionally top with:
    • Pumpkin seeds
    • Streusel crumble
    • Cinnamon sugar

4️⃣ Bake to Perfection

⏱ Time: 20–25 minutes

  • Preheat oven to 350°F (175°C).
  • Bake muffins for 20–25 minutes, or until the tops are domed and golden and a toothpick inserted (off-center!) comes out clean.
  • Let them cool in the pan for 5 minutes, then transfer to a wire rack.

5️⃣ Cool & Store

  • Let muffins cool to room temperature before eating — the filling will be very hot!
  • Store in an airtight container in the fridge for up to 5 days.
  • To freeze: wrap individually in plastic wrap and store for up to 1 month.

✨ Customizations & Variations

One of the best things about this recipe is how flexible it is. Once you’ve mastered the base, there are endless ways to make it your own. Whether you’re looking to spice it up, make it healthier, or just try something new, here are some fun twists you can experiment with:


🍫 Add-ins & Mix-ins

  • Chocolate Chips – Add ½ cup of mini chocolate chips to the batter for a rich, dessert-like version.
  • Chopped Pecans or Walnuts – For a nutty crunch and autumn flavor boost.
  • Dried Cranberries – Add a tart contrast to the sweetness.
  • White Chocolate Chunks – Pair beautifully with pumpkin and cream cheese.

🍯 Healthy-ish Swaps

  • Use Greek Yogurt – Replace half the oil with plain Greek yogurt for extra protein and fewer calories.
  • Whole Wheat Flour – Swap half the all-purpose flour with whole wheat flour for a heartier texture.
  • Maple Syrup or Honey – Replace part of the sugar with natural sweeteners (reduce milk slightly if doing this).

🌱 Vegan & Dairy-Free Options

  • Vegan Cream Cheese – Use a plant-based cream cheese like Kite Hill or Tofutti.
  • Egg Replacer – Swap eggs for flax eggs (1 tbsp flaxseed + 3 tbsp water per egg).
  • Non-dairy Milk – Almond, oat, or soy milk work perfectly.

👶 Make Mini Muffins

  • Use a mini muffin pan and bake for 10–12 minutes instead of 20–25.
  • Great for kids’ lunches, brunch platters, or portion control (though you’ll probably eat 3 anyway 😄).

🍁 Topping Variations

  • Cinnamon Sugar Dusting – Lightly sprinkle a mix of sugar and cinnamon before baking for a sweet crust.
  • Crumb Topping – Use a simple streusel made with butter, flour, and brown sugar.
  • Glaze – Drizzle with a light vanilla or maple glaze after cooling.

💡 Expert Tips & Troubleshooting

Even simple recipes can have hidden tricks. These pro tips will help you get perfect results every time and avoid common muffin mishaps. Whether you’re a first-time baker or a seasoned pro, these insights will make your pumpkin cream cheese muffins truly bakery-worthy. 🧁


🔥 Expert Tips

  • Don’t Overmix the Batter
    Mix just until the dry ingredients are combined. Overmixing leads to dense, tough muffins instead of light and fluffy ones.
  • Use Room Temperature Cream Cheese
    This ensures your filling is smooth and lump-free. Cold cream cheese won’t blend properly and may result in a gritty texture.
  • Chill the Cream Cheese Filling Before Assembling
    A cold filling is easier to work with and won’t melt too early in the oven, which helps it stay neatly centered.
  • Use a Cookie Scoop or Ice Cream Scoop
    For evenly-sized muffins, use a scoop to portion the batter — it’s cleaner and ensures consistent baking.
  • Top Strategically
    When using streusel or seeds, sprinkle lightly and evenly. Too much can weigh the muffins down and prevent proper rise.
  • Bake in the Center of the Oven
    For even heat distribution, place your muffin tray on the middle rack.

🛠️ Troubleshooting

  • Cream Cheese Disappears Inside
    This can happen if it’s too soft or placed too low. Chill the filling and place it gently at the center.
  • Muffins Are Too Dense
    Likely from overmixing or old leavening agents. Always check expiration dates on baking powder and soda.
  • Soggy Bottoms?
    Use a wire rack to cool muffins after baking — keeping them in the hot tin traps moisture underneath.
  • Flat Tops Instead of Domes
    Make sure your oven is fully preheated to 350°F before baking, and don’t underfill the muffin cups.

❓ Frequently Asked Questions (FAQs)

Can you freeze Pumpkin Cream Cheese Muffins?

Yes! These muffins freeze beautifully. Once they’ve cooled completely, wrap them individually in plastic wrap, then place them in an airtight freezer-safe bag or container. They’ll stay fresh in the freezer for up to 1 month.

What’s the difference between pumpkin purée and pumpkin pie filling?

Great question — and an important one!
Pumpkin purée is 100% pure pumpkin with no added sugar or spices.
Pumpkin pie filling contains sweeteners and spices and is not suitable for this recipe.

Do I need to refrigerate these muffins?

Yes — because of the cream cheese filling. Store them in an airtight container in the refrigerator for up to 5 days. They’re delicious cold or slightly warmed.

Can I make these gluten-free or dairy-free?

Absolutely!
Gluten-free: Use a 1:1 gluten-free flour blend.
Dairy-free: Substitute with dairy-free cream cheese (like Kite Hill or Tofutti) and use a non-dairy milk such as almond or oat milk.

How do I keep the cream cheese from sinking or disappearing?

To prevent the filling from sinking:
Chill the cream cheese filling before assembling.
Gently place the filling in the center — not too deep.
Avoid overmixing the filling, which can cause it to puff up and vanish during baking.


🧁 Conclusion: Fall in Love with Every Bite

There’s something magical about the combination of spiced pumpkin and creamy cheesecake baked into a warm muffin. These Pumpkin Cream Cheese Muffins are more than just a seasonal recipe — they’re a cozy, satisfying way to celebrate fall flavors and create delicious memories, one batch at a time. 🍂

Whether you’re:

  • Enjoying them with a morning latte,
  • Packing them for a fall picnic,
  • Or delivering them as a sweet thank-you to friends…

…they’re guaranteed to become a yearly tradition in your kitchen.

If you’re looking for even more ideas to embrace the season, check out our roundup of fall baking inspiration — it’s full of recipes that’ll make your home smell like a bakery.

And for even more muffin ideas and baking basics, visit AllRecipes’ muffin guide for trusted tips and classic variations.

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